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homemade matlab software package  (MathWorks Inc)


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    MathWorks Inc homemade matlab software package
    Homemade Matlab Software Package, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 96/100, based on 297 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/homemade matlab software package/product/MathWorks Inc
    Average 96 stars, based on 297 article reviews
    homemade matlab software package - by Bioz Stars, 2026-03
    96/100 stars

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    Overall scheme of nanospectral data analysis. Raw current blockade signals stored in ABFs are analyzed by a homemade software package based on OpenNanopore to extract nanospectra, which are filtered to remove those with short duration times. The orientations of nanospectra are determined by comparing original and flipped empirical nanospectra with the theoretical nanospectra of the peptide, and backward empirical nanospectra are flipped. The averaging or progressive alignment method is employed to generate a consensus empirical nanospectrum. A theoretical nanospectrum is generated using the 1AAV or 1AAV-P model. Finally, the empirical consensus nanospectrum is aligned with the theoretical nanospectrum using DTW to find an alignment between the two nanospectra, and the PCC of the aligned nanospectra is computed.

    Journal: Scientific Reports

    Article Title: Calling the amino acid sequence of a protein/peptide from the nanospectrum produced by a sub-nanometer diameter pore

    doi: 10.1038/s41598-022-22305-x

    Figure Lengend Snippet: Overall scheme of nanospectral data analysis. Raw current blockade signals stored in ABFs are analyzed by a homemade software package based on OpenNanopore to extract nanospectra, which are filtered to remove those with short duration times. The orientations of nanospectra are determined by comparing original and flipped empirical nanospectra with the theoretical nanospectra of the peptide, and backward empirical nanospectra are flipped. The averaging or progressive alignment method is employed to generate a consensus empirical nanospectrum. A theoretical nanospectrum is generated using the 1AAV or 1AAV-P model. Finally, the empirical consensus nanospectrum is aligned with the theoretical nanospectrum using DTW to find an alignment between the two nanospectra, and the PCC of the aligned nanospectra is computed.

    Article Snippet: The nanospectra in ABFs were extracted using a homemade MATLAB software package based on OpenNanopore (version 1.2) .

    Techniques: Software, Generated